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based upon repeat pattern (burp) algorithm of the ridom staph type software version 1.4  (Ridom GmbH)

 
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    Ridom GmbH based upon repeat pattern (burp) algorithm of the ridom staph type software version 1.4
    Based Upon Repeat Pattern (Burp) Algorithm Of The Ridom Staph Type Software Version 1.4, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/burp+(based+upon+repeat+pattern)+algorithm/burp+algorithm+ridom+staphtype+software+version+2+2+1/pmc11335753-99-18-23
    Average 90 stars, based on 1 article reviews
    based upon repeat pattern (burp) algorithm of the ridom staph type software version 1.4 - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: Population structure analyses of Staphylococcus aureus at Tygerberg Hospital, South Africa, reveals a diverse population, a high prevalence of Panton-Valentine leukocidin genes, and unique local methicillin-resistant S. aureus clones.
    Article Snippet: PFGE pulsotypes were classified on the basis of the number of isolates and unique PFGE types as major pulsotypes (more than ten isolates/PFGE types), intermediate pulsotypes (four to nine isolates/PFGE types), or minor pulsotypes (two or three isolates/PFGE types). spa typing and MLST. spa typing was performed as previously described [13]. spa types were clustered into spa-CCs with the algorithm Based Upon Repeat Pattern (BURP) (RIDOM StaphType v.2.1.1; RIDOM, W€urzburg, Germany) with a distance cost of ≤5; spa types shorter than four repeats were excluded [14].

    Article Title: Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution.
    Article Snippet: This approach is available in the BURP (based upon repeat pattern) algorithm [37], implemented in the Ridom StaphType software, but could also be applied to other VNTR analysis.



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